This is not a bug but I was hoping you could assist me. I am trying to get the percent methylation values appended to the methylSigDiff output. I know I can generate the the percent methylation with the command
x = meth[,"numCs"]/meth[, "coverage"]colnames(x) = meth@sample.ids
However, when I attempt to append the chromosomal positions to that, I think they are somehow being sorted because they no longer match with the coordinates from the methylSigDiff output. I am sure the error is on my end and not on yours. I am not experienced dealing with S4 data objects so it's difficult for me to figure this out. Any assistance would be greatly appreciated.
This is not a bug but I was hoping you could assist me. I am trying to get the percent methylation values appended to the methylSigDiff output. I know I can generate the the percent methylation with the command
x = meth[,"numCs"]/meth[, "coverage"]colnames(x) = meth@sample.idsHowever, when I attempt to append the chromosomal positions to that, I think they are somehow being sorted because they no longer match with the coordinates from the methylSigDiff output. I am sure the error is on my end and not on yours. I am not experienced dealing with S4 data objects so it's difficult for me to figure this out. Any assistance would be greatly appreciated.