A function to remove loci in a BSseq object by intersection with a GRanges object. This function is called by the filter_loci_by_snps() function.
Arguments
bs a BSseq object.
gr a GRanges object of the locations to be removed. This object can contain CpG-level locations (as with SNPs), region-level locations, or a combination.
Values
A BSseq object with loci overlapping remove_gr removed.
Function call
filter_loci_by_location(bs, gr)Description
A function to remove loci in a
BSseqobject by intersection with aGRangesobject. This function is called by thefilter_loci_by_snps()function.Arguments
bsaBSseqobject.graGRangesobject of the locations to be removed. This object can contain CpG-level locations (as with SNPs), region-level locations, or a combination.Values
A
BSseqobject with loci overlappingremove_grremoved.Tests
Test correct removal.