This will remove bismarkReadData(), its supporting functions, and its documentation. Instead, users encouraged to use an awk script to convert CpG_report.txt output from bismark_methylation_extractor into data readable by methylSigReadData().
Package vignette content is updated, and the method of building it is changed to rmarkdown + knitr. The awk script mentioned above is described in the new vignette.
This will remove bismarkReadData(), its supporting functions, and its documentation. Instead, users encouraged to use an awk script to convert CpG_report.txt output from bismark_methylation_extractor into data readable by methylSigReadData().
Package vignette content is updated, and the method of building it is changed to rmarkdown + knitr. The awk script mentioned above is described in the new vignette.