Switch from cutadapt to trim_galore

sartorlab / mint

A pipeline for the integration of DNA methylation and hydroxymethylation data

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Switch from cutadapt to trim_galore #1

Closed rcavalcante closed 8 years ago

rcavalcante commented 8 years ago

This will allow adapter trimming and quality trimming. Will need to change the way we convert from sample IDs to human IDs because trim_galore doesn't have an output name parameter.

rcavalcante commented 8 years ago

Done in 675d7610c73d0320ee4c217f2f4b5fc34be615af.