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sartorlab
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mint
A pipeline for the integration of DNA methylation and hydroxymethylation data
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v0.1.2-beta into master
#19
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rcavalcante
closed
8 years ago
rcavalcante
commented
8 years ago
Update VERSIONS
Create project specific /tmp folder
Improved makefile and config.mk documentation
Fix --mfold parameter formatting for macs2
Autofill for --gsize parameter when genome is hg19, hg38, mm9, or mm10
Remove PBS script creation
Add fold change plots to PePr and macs2
Add multiqc output (split for bisulfite and pulldown)
makefile reorganization and clarification
Add group labels for comparisons to improve interpretability