Migrate to using bowtie2 with bismark

sartorlab / mint

A pipeline for the integration of DNA methylation and hydroxymethylation data

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Closed rcavalcante closed 8 years ago

rcavalcante commented 8 years ago

The default aligner in bismark v0.14.x is now bowtie2, so we're going to migrate to that as the default.

rcavalcante commented 8 years ago

Done in 675d7610c73d0320ee4c217f2f4b5fc34be615af.