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satijalab / azimuth-references

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Allen Brain atlas reference files have moved to new URL #1

Closed tomsing1 closed 3 years ago

tomsing1 commented 3 years ago

It seems that the reference Mouse_M1_10xV3_Matrix.RDS has moved and is no longer available from the URL listed in the Snakemake file:

https://github.com/satijalab/azimuth-references/blob/5f5255dac552d9ef86b872d37e212275cd0f2ae2/mouse_motorcortex/Snakefile#L14

tomsing1 commented 3 years ago

I think the new location is:

http://data.nemoarchive.org/publication_release/2020_M1_study_analysis/Transcriptomics/sncell/10X/mouse/processed/counts/counts/M1/

andrewwbutler commented 3 years ago

Thanks for bringing this up and sorry for the slow response. It looks like it's here now:

http://data.nemoarchive.org/publication_release/Lein_2020_M1_study_analysis/Transcriptomics/sncell/10X/mouse/processed/counts/counts/M1/

I've updated the URLs in the master branch to reflect this new location.