I attempted to recreate the bmmc-reference, and I noticed the current repo did not contain the following files, nor code that generates these files:
data/hca/manifest.tsv, which I take it to be the HCA manifest file. Can you confirm?
data/annotations.csv.gz: The snakemake file is the only place this file was mentioned, and nowhere else on this repo. What exactly does this file contain, and how is it generated?
I would appreciate it if you can clarify these issues.
Hi,
I attempted to recreate the bmmc-reference, and I noticed the current repo did not contain the following files, nor code that generates these files:
data/hca/manifest.tsv
, which I take it to be the HCA manifest file. Can you confirm?data/annotations.csv.gz
: The snakemake file is the only place this file was mentioned, and nowhere else on this repo. What exactly does this file contain, and how is it generated?I would appreciate it if you can clarify these issues.