error with install azimuth

[turuilin]

when l tried to install azimuth, error has occurred:

remotes::install_github('satijalab/azimuth', ref = 'master') Using github PAT from envvar GITHUB_TOKEN Downloading GitHub repo satijalab/azimuth@master Error: Failed to install 'Azimuth' from GitHub: HTTP error 404. No commit found for the ref seurat5

Did you spell the repo owner (stuart-lab) and repo name (signac) correctly?

• If spelling is correct, check that you have the required permissions to access the repo.

[alexQiSong]

Same issue here. Did you manage to find a solution?

[Jacobog02]

Same Issue as well. Attempted to install Signac by install.packages("Signac") and remotes::install_github("staurt-lab/signac, ref = "develop") Appears to be due to 2 days ago timoast removed the seurat5 branch see R-CMD-check #474 commit c05e583 in the Signac repo

[Jacobog02]

Same Issue as well. Attempted to install Signac by install.packages("Signac") and remotes::install_github("staurt-lab/signac, ref = "develop") Appears to be due to 2 days ago timoast removed the seurat5 branch see R-CMD-check #474 commit c05e583 in the Signac repo

I fixed the issue by forking the Azimuth repo and removing @seurat5 from line 29 in DESCRIPTION and I have verified the installation now works. @turuilin @alexQiSong I recommend you do the same until the fix gets pushed OR feel free to install my fork via remotes::install_github("Jacobog02/azimuth_stopgap")

[mihem]

same here. maybe @Gesmira for this quick fix?

[Gesmira]

Hi all, Thank you for bringing this to my attention! The master branch of Azimuth is now updated to install directly from the newest version of Signac on CRAN.

[ClarisseGanier]

I fixed it by installing "BSgenome.Hsapiens.UCSC.hg38" separately using : if (!require("BiocManager", quietly = TRUE)) install.packages("BiocManager") BiocManager::install("BSgenome.Hsapiens.UCSC.hg38")