Error in eval(predvars, data, env) : object 'log_umi' not found

satijalab / azimuth

A Shiny web app for mapping datasets using Seurat v4

https://satijalab.org/azimuth

GNU General Public License v3.0

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Open Tycooner opened 10 months ago

Tycooner commented 10 months ago

what it means ?

yzh37545 commented 10 months ago

same issue

hoangan-nguyen commented 8 months ago

Calculate log10(nCount) and put into the query metadata query@meta.data['log_umi'] <- log10(calcn$nCount)

StefanMDPhD commented 8 months ago

@hoangan-nguyen. Thanks that really helped. Specifically what worked for me was: query@meta.data['log_umi'] <- log10(query$nCount_RNA)