RunAzimuth offline with homolog.table path reference

satijalab / azimuth

A Shiny web app for mapping datasets using Seurat v4

https://satijalab.org/azimuth

GNU General Public License v3.0

109 stars 31 forks source link

RunAzimuth offline with homolog.table path reference #217

Open KalinNonchev opened 7 months ago

KalinNonchev commented 7 months ago

Hi,

I would like to use RunAzimuth offline/ without internet connection. For this, I have downloaded already the ref.Rds and idx.annoy files I need. However, here https://github.com/satijalab/azimuth/blob/243ee5db80fcbffa3452c944254a325a3da2ef9e/R/azimuth.R#L103 the homologs link is hardcoded and I don't see an option to specify a local copy of the homolog.table file from RunAzimuth. Could you help me with this?

Thank you in advance!

Best,

KalinNonchev commented 7 months ago

Hi, I created a pull request regarding this issue: https://github.com/satijalab/azimuth/pull/218

KalinNonchev commented 7 months ago

@rsatija @saketkc @andrewwbutler @keller-mark could you look into this when you have time? Thank you!

KalinNonchev commented 6 months ago

@Gesmira could you look into this as well? I think it should work. Thank you

yzh37545 commented 3 weeks ago

Same issue here