satijalab / scChromHMM

🧬 🦀 A fast and efficient tool to perform a genome wide Single cell Chromatin State Analysis using multimodal histone modification data.
BSD 3-Clause "New" or "Revised" License
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Support of query cell ID other than 10X format #2

Open Xieeeee opened 3 years ago

Xieeeee commented 3 years ago

Hi, I wonder whether grabbing query cells from the fragment.tsv file could be run the same as common_cells, ie providing a reference list for hashing or so. Why I am asking is because for other technique like Paired-Tag or Paired-seq the cell ID is like aa:bb:cc rather than XXX-1. It would be really great if versatile barcodes format would be considered, as this tool can be applied broader.

Thanks!!

k3yavi commented 2 years ago

I think that's a very good idea @Xieeeee and we are actively working on supporting such a feature. We'd let you know once we merge the support of the feature.