SCTransform Node Stack Overflow Error - one cause (Rfast package)

satijalab / sctransform

R package for modeling single cell UMI expression data using regularized negative binomial regression

GNU General Public License v3.0

203 stars 33 forks source link

SCTransform Node Stack Overflow Error - one cause (Rfast package) #108

Open andrei-stoica26 opened 3 years ago

andrei-stoica26 commented 3 years ago

Hi Christoph,

Loading the Rfast package triggers a Node Stack Overflow Error in SCTransform. The error message is the same as the one seen e.g. here (https://github.com/satijalab/seurat/issues/3904) and here (https://github.com/ChristophH/sctransform/issues/87).

Rfast triggers the same error in another Seurat function, FindNeighbors, if nn.method is not set to "rann" (https://github.com/satijalab/seurat/issues/4263). I hope this information will be useful.

Best, Andrei

ChristophH commented 3 years ago

Hi Andrei,

Yes, you are right, thank you for bringing it up.

I had I run into this problem (again) recently. The problem is also described here https://github.com/RfastOfficial/Rfast/issues/5

I will add it to the known issues section.