non-stop when running SCTransform()

satijalab / sctransform

R package for modeling single cell UMI expression data using regularized negative binomial regression

GNU General Public License v3.0

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non-stop when running SCTransform() #114

Closed zhijunyuu closed 2 years ago

zhijunyuu commented 2 years ago

Hey sctransform team,

Thanks for this nice tool!

Recently I upgraded the R version from R 4.0.3 to R 4.1.0, and now I met the problem of non-stop when running SCTransform(). I am using the development version: sctransform_0.3.2.9008 and I did not have any problem when running SCTransform() under R 4.0.3

I am not sure whether it is the compatibility problem or just my environment setting issue. Do you have any idea about this? Thanks in advance.

Best, Zhijun

zhijunyuu commented 2 years ago

It turned out that I forgot to install package "glmGamPoi" in R 4.1.0, now problem solved.

Best, Zhijun