Using the SCTransform integrated "data" slot as corrected counts for downstream pseudotime analysis

satijalab / sctransform

R package for modeling single cell UMI expression data using regularized negative binomial regression

GNU General Public License v3.0

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Closed lucygarner closed 2 years ago

lucygarner commented 2 years ago

Hi,

I put this as a question in the Seurat GitHub, but I thought it might be good to link to it here as well: https://github.com/satijalab/seurat/issues/5291

Best wishes, Lucy

ChristophH commented 2 years ago

Saket answered this. Please do not cross-post issues.