Questions about errors in the sctransform for selected genes

satijalab / sctransform

R package for modeling single cell UMI expression data using regularized negative binomial regression

GNU General Public License v3.0

203 stars 33 forks source link

Questions about errors in the sctransform for selected genes #158

Closed HelloWorldLTY closed 1 year ago

HelloWorldLTY commented 1 year ago

Hi, I select 1000 genes here for sctransform, but the return data only contain 999 genes. I believe that there are some bugs. Could you please help me? Thanks a lot.

saketkc commented 1 year ago

You should run SCTransform as SCTransform(vst.flavor="v2", variable.features.n =1000).