how to run sctransform in python on h5ad UMI matrix count?

satijalab / sctransform

R package for modeling single cell UMI expression data using regularized negative binomial regression

GNU General Public License v3.0

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how to run sctransform in python on h5ad UMI matrix count? #197

Closed winner0809 closed 1 month ago

winner0809 commented 1 month ago

i have a very large h5ad file that can't be converted and read into R due to r's limitation on row numbers, but to be consistent with other cell types that I processed, I need to run sctransform on this h5ad file directly, any suggestions?