iteration limit reached - help

satijalab / sctransform

R package for modeling single cell UMI expression data using regularized negative binomial regression

GNU General Public License v3.0

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Closed ltosti closed 4 years ago

ltosti commented 4 years ago

Hi there,

I'm trying to used the Reference-based workflow to merge my query with a reference dataset in Seurat3. When I ran

for (i in names(list_pc)) {
   list_pc[[i]] <- SCTransform(list_pc[[i]], verbose = FALSE)
}

I got hundreds of iteration limit reached and after waiting for a while I could only stop the process. Do you know what's causing this?

Thank you!

ChristophH commented 4 years ago

In case the problem still persists, please provide more detail. Could you provide the exact warning or error messages that you are seeing?