Error in if (sum(outliers) > 0) { : missing value where TRUE/FALSE needed

satijalab / sctransform

R package for modeling single cell UMI expression data using regularized negative binomial regression

GNU General Public License v3.0

206 stars 33 forks source link

Open bluejek128 opened 4 years ago

bluejek128 commented 4 years ago

Hello

I get this error message when I run the function as below with my own dataset:

SCTransform(pbmc, vars.to.regress = "percent.mt", verbose = FALSE)

Could you please clarify why this error is indicated?

Thanks so much

gokceneraslan commented 4 years ago

I also get this error sometimes, no clue.

ChristophH commented 4 years ago

I don't know what is causing this. Could you share (a subset of) the data and the exact commands that trigger that error?

gokceneraslan commented 4 years ago

I can reproduce this only with the full dataset which is already very big, I'll try to reproduce it with a subset and let you know. Thanks.