Error in installing 'stxBrain' data from the SeuratData

[vHelmholtz]

Hello Satijalab,

I have an error in installing 'stxBrain' data from the SeuratData. Could you please give me any advice about this issue?

> InstallData("stxBrain") Installing package into ‘C:/Users/jongshin.kim/Documents/R/win-library/3.6’ (as ‘lib’ is unspecified) Warning: dependency ‘Seurat’ is not available trying URL 'http://seurat.nygenome.org/src/contrib/stxBrain.SeuratData_0.1.1.tar.gz' Content type 'application/octet-stream' length 110346050 bytes (105.2 MB) downloaded 105.2 MB

• installing source package 'stxBrain.SeuratData' ... using staged installation R ** data * moving datasets to lazyload DB byte-compile and prepare package for lazy loading Error: package 'Seurat' required by 'stxBrain.SeuratData' could not be found Execution halted ERROR: lazy loading failed for package 'stxBrain.SeuratData'
• removing 'C:/Users/jongshin.kim/Documents/R/win-library/3.6/stxBrain.SeuratData'

The downloaded source packages are in ‘C:\Users\Public\Documents\ESTsoft\CreatorTemp\RtmpgPtoMI\downloaded_packages’ Error in loadNamespace(name) : there is no package called ‘stxBrain.SeuratData’ In addition: Warning message: In install.packages(pkgs = pkgs, repos = getOption(x = "SeuratData.repo.use"), : installation of package ‘stxBrain.SeuratData’ had non-zero exit status

Even though I tried the code recommended in #15, it did not work as below.

> install.packages("http://seurat.nygenome.org/src/contrib/stxBrain.SeuratData_0.1.1.tar.gz", repos = NULL, type = "source") Installing package into ‘C:/Users/jongshin.kim/Documents/R/win-library/3.6’ (as ‘lib’ is unspecified) trying URL 'http://seurat.nygenome.org/src/contrib/stxBrain.SeuratData_0.1.1.tar.gz' Content type 'application/octet-stream' length 110346050 bytes (105.2 MB) downloaded 105.2 MB

• installing source package 'stxBrain.SeuratData' ... using staged installation R ** data * moving datasets to lazyload DB byte-compile and prepare package for lazy loading Error: package 'Seurat' required by 'stxBrain.SeuratData' could not be found Execution halted ERROR: lazy loading failed for package 'stxBrain.SeuratData'
• removing 'C:/Users/jongshin.kim/Documents/R/win-library/3.6/stxBrain.SeuratData' Warning in install.packages : installation of package ‘C:/Users/Public/Documents/ESTsoft/CreatorTemp/RtmpgPtoMI/downloaded_packages/stxBrain.SeuratData_0.1.1.tar.gz’ had non-zero exit status

[vHelmholtz]

Now, the installation of "stxBrain" is working.

[mieko-cc]

Now, the installation of "stxBrain" is working.

could you tell me how to install this data, i suffered the same question, thank you!

[huangch]

Tried spxBrain and got the same error.

[cpusummer-wdn]

I had the same question.

[ChenJiyangOnline]

I suffered the same question as well. When I perform the command "InstallData("stxBrain")", it reported the followinng error message:

trying URL 'http://seurat.nygenome.org/src/contrib/stxBrain.SeuratData_0.1.1.tar.gz' Content type 'application/octet-stream' length 110346050 bytes (105.2 MB) downloaded 32.0 MB

Error in download.file(url, destfile, method, mode = "wb", ...) : download from 'http://seurat.nygenome.org/src/contrib/stxBrain.SeuratData_0.1.1.tar.gz' failed In addition: Warning messages: 1: In download.file(url, destfile, method, mode = "wb", ...) : downloaded length 0 != reported length 0

Therefore, I tried the command mentioned upper: "install.packages("http://seurat.nygenome.org/src/contrib/stxBrain.SeuratData_0.1.1.tar.gz", repos = NULL, type = "source")" It worked.

My R.version is R version 4.3.0 (2023-04-21 ucrt).