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satijalab / seurat-data

Dataset distribution for Seurat
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Issue with installation of data from SeuratData.unable to install "pbmc3k.final" datasets #27

Closed Aby-GGG closed 3 years ago

Aby-GGG commented 4 years ago

Hi,

I have successfully installed SeuratData and I am able to see available datasets using the AvailableData() command. image However, when I try to install the "pbmc3k.final" dataset using InstallData("pbmc3k.final"), I get the following error: image

What may be the reason for this?I am using Seurat version 3.1.3 and R version 3.6.3.

bassanio commented 3 years ago

Have you tried this way?

pbmc3k <- LoadData(ds = "pbmc3k.final")
no-response[bot] commented 3 years ago

This issue has been automatically closed because there has been no response to our request for more information from the original author. With only the information that is currently in the issue, we don't have enough information to take action. Please reach out if you have or find the answers we need so that we can investigate further.

vgilbart commented 5 months ago

In case some stubbles on this issue here's how to load pbmc3k.final:

InstallData("pbmc3k")
pbmc3k <- LoadData("pbmc3k", type = "pbmc3k.final")