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satijalab / seurat-data

Dataset distribution for Seurat
GNU General Public License v3.0
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download timeout #29

Closed AlgoLab-XJTU closed 3 years ago

AlgoLab-XJTU commented 4 years ago

InstallData("stxBrain") trying URL 'http://seurat.nygenome.org/src/contrib/stxBrain.SeuratData_0.1.1.tar.gz' Content type 'application/octet-stream' length 110346050 bytes (105.2 MB)

downloaded 18.7 MB

Error in download.file(url, destfile, method, mode = "wb", ...) : download from 'http://seurat.nygenome.org/src/contrib/stxBrain.SeuratData_0.1.1.tar.gz' failed In addition: Warning messages: 1: In download.file(url, destfile, method, mode = "wb", ...) : downloaded length 19611317 != reported length 110346050 2: In download.file(url, destfile, method, mode = "wb", ...) : URL 'https://seurat.nygenome.org/src/contrib/stxBrain.SeuratData_0.1.1.tar.gz': Timeout of 60 seconds was reached Warning in download.packages(pkgs, destdir = tmpd, available = available, : download of package ‘stxBrain.SeuratData’ failed Error in loadNamespace(name) : there is no package called ‘stxBrain.SeuratData’

Fan-iX commented 3 years ago

you can set the timeout limit for download.packages() to 600s by options(timeout=600) , which may be enough for your downloading

AMechels commented 3 years ago

Encountered the same error today, @Fan-iX your solution worked, thank you very much!