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satijalab / seurat-data

Dataset distribution for Seurat
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Full name of the L2 level annotations for the "bmcite" dataset #31

Closed luoping1004 closed 3 years ago

luoping1004 commented 3 years ago

Dear Seurat team members,

Thank you for generating these valuable datasets!

Recently, I tried to use the bone marrow dataset ("bmcite") as reference to annotate single-cell data in my study. I noticed that l2 level annotations were available in the metadata slot. Although most of the these annotations were easy to understand, types such as 'CD8 Effector_1', 'CD8 Effector_2', 'CD8 Memory_1', 'CD8 Memory_2' were difficult to understand. I guess there are some markers that discriminate them?

Then I tried to find the answers in the paper that published this dataset. Unfortunately, I couldn't find any details about these cell types. Could anyone tell me the full name of these L2 annotations?

Thanks,

andrewwbutler commented 3 years ago

Hi,

You can find heatmaps of genes that define these annotations in Supplementary Figure 2G (link). Hopefully that makes the distinctions a bit more clear.