Open NeuroBuzz opened 1 year ago
Timeout of 60 seconds was reached
might ring a bell:
See e.g. issue #46: https://github.com/satijalab/seurat-data/issues/46#issuecomment-1382010708
This problem still persists as of 2024 Feb.
I could successfully download the panc8
dataset but not the ifnb
dataset (for the integration tutorial).
Perhaps the authors can consider specifying the timeout option as some supporting code on the manual page.
I am trying to follow the Introduction to scRNA-seq integration walk through but am having trouble getting the info dataset installed and loaded into RStudio.
Installing package into ‘/Users/xxxx/Library/R/x86_64/4.2/library’ (as ‘lib’ is unspecified) trying URL 'http://seurat.nygenome.org/src/contrib/ifnb.SeuratData_3.1.0.tar.gz' Content type 'application/octet-stream' length 413266233 bytes (394.1 MB)
downloaded 141.1 MB
Error in download.file(url, destfile, method, mode = "wb", ...) : download from 'http://seurat.nygenome.org/src/contrib/ifnb.SeuratData_3.1.0.tar.gz' failed In addition: Warning messages: 1: In download.file(url, destfile, method, mode = "wb", ...) : downloaded length 148000418 != reported length 413266233 2: In download.file(url, destfile, method, mode = "wb", ...) : URL 'https://seurat.nygenome.org/src/contrib/ifnb.SeuratData_3.1.0.tar.gz': Timeout of 60 seconds was reached Warning in download.packages(pkgs, destdir = tmpd, available = available, : download of package ‘ifnb.SeuratData’ failed Error in loadNamespace(name) : there is no package called ‘ifnb.SeuratData’
Can anybody help me ? I have also tried the suggested solutions from another post by using InstallData("info.SeuratData") but this also gave the same error message.