Closed emily-grantham closed 5 months ago
> install.packages("SeuratData") Warning in install.packages : package ‘SeuratData’ is not available for this version of R > sessionInfo() R version 4.4.1 (2024-06-14) Platform: x86_64-apple-darwin20 Running under: macOS Ventura 13.6.1 Matrix products: default BLAS: /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libBLAS.dylib LAPACK: /Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/lib/libRlapack.dylib; LAPACK version 3.12.0 locale: [1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8 time zone: America/Chicago tzcode source: internal attached base packages: [1] stats graphics grDevices utils datasets methods base other attached packages: [1] patchwork_1.2.0 loupeR_1.1.1 Seurat_5.1.0 SeuratObject_5.0.2 [5] sp_2.1-4 loaded via a namespace (and not attached): [1] RColorBrewer_1.1-3 rstudioapi_0.16.0 jsonlite_1.8.8 [4] magrittr_2.0.3 spatstat.utils_3.0-5 fs_1.6.4 [7] zlibbioc_1.50.0 vctrs_0.6.5 ROCR_1.0-11 [10] memoise_2.0.1 spatstat.explore_3.2-7 usethis_2.2.3 [13] htmltools_0.5.8.1 sctransform_0.4.1 parallelly_1.37.1 [16] KernSmooth_2.23-24 htmlwidgets_1.6.4 ica_1.0-3 [19] plyr_1.8.9 plotly_4.10.4 zoo_1.8-12 [22] cachem_1.1.0 igraph_2.0.3 mime_0.12 [25] lifecycle_1.0.4 pkgconfig_2.0.3 Matrix_1.7-0 [28] R6_2.5.1 fastmap_1.2.0 GenomeInfoDbData_1.2.12 [31] fitdistrplus_1.1-11 future_1.33.2 shiny_1.8.1.1 [34] digest_0.6.36 colorspace_2.1-0 AnnotationDbi_1.66.0 [37] S4Vectors_0.42.0 tensor_1.5 RSpectra_0.16-1 [40] irlba_2.3.5.1 pkgload_1.3.4 RSQLite_2.3.7 [43] progressr_0.14.0 fansi_1.0.6 spatstat.sparse_3.1-0 [46] httr_1.4.7 polyclip_1.10-6 abind_1.4-5 [49] compiler_4.4.1 remotes_2.5.0 bit64_4.0.5 [52] DBI_1.2.3 fastDummies_1.7.3 pkgbuild_1.4.4 [55] MASS_7.3-61 sessioninfo_1.2.2 tools_4.4.1 [58] lmtest_0.9-40 httpuv_1.6.15 future.apply_1.11.2 [61] goftest_1.2-3 glue_1.7.0 nlme_3.1-165 [64] promises_1.3.0 grid_4.4.1 Rtsne_0.17 [67] cluster_2.1.6 reshape2_1.4.4 generics_0.1.3 [70] hdf5r_1.3.10 gtable_0.3.5 spatstat.data_3.1-2 [73] tzdb_0.4.0 tidyr_1.3.1 data.table_1.15.4 [76] XVector_0.44.0 utf8_1.2.4 BiocGenerics_0.50.0 [79] spatstat.geom_3.2-9 RcppAnnoy_0.0.22 ggrepel_0.9.5 [82] RANN_2.6.1 pillar_1.9.0 stringr_1.5.1 [85] vroom_1.6.5 spam_2.10-0 RcppHNSW_0.6.0 [88] later_1.3.2 splines_4.4.1 dplyr_1.1.4 [91] lattice_0.22-6 survival_3.7-0 bit_4.0.5 [94] deldir_2.0-4 tidyselect_1.2.1 Biostrings_2.72.1 [97] miniUI_0.1.1.1 pbapply_1.7-2 gridExtra_2.3 [100] IRanges_2.38.0 scattermore_1.2 stats4_4.4.1 [103] Biobase_2.64.0 devtools_2.4.5 matrixStats_1.3.0 [106] UCSC.utils_1.0.0 stringi_1.8.4 lazyeval_0.2.2 [109] codetools_0.2-20 tibble_3.2.1 BiocManager_1.30.23 [112] cli_3.6.3 uwot_0.2.2 xtable_1.8-4 [115] reticulate_1.38.0 munsell_0.5.1 GenomeInfoDb_1.40.1 [118] Rcpp_1.0.12 globals_0.16.3 spatstat.random_3.2-3 [121] png_0.1-8 parallel_4.4.1 ellipsis_0.3.2 [124] ggplot2_3.5.1 blob_1.2.4 dotCall64_1.1-1 [127] profvis_0.3.8 urlchecker_1.0.1 listenv_0.9.1 [130] viridisLite_0.4.2 scales_1.3.0 ggridges_0.5.6 [133] crayon_1.5.3 leiden_0.4.3.1 purrr_1.0.2 [136] rlang_1.1.4 cowplot_1.1.3 KEGGREST_1.44.1
SeuratData is not available on CRAN; to install, please use
remotes::install_github("satijalab/seurat-data")