satijalab seurat-object issues

satijalab / seurat-object

https://satijalab.github.io/seurat-object/

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Fix broken links in pkgdown website

#226 mojaveazure closed 4 hours ago
1
Broken links on satijalab.org reference pages

#225 pormr closed 4 hours ago
0
add calcN parameter to CreateSeuratObject

#224 mhkowalski opened 3 weeks ago
1
The seuratobject version matches the seurat version

#223 PanSX-Dr opened 1 month ago
0
Execution Speed of LayerData & co.

#222 vertesy opened 1 month ago
0
Issue with SCTransform

#221 AnupaSP opened 1 month ago
1
Elaborate on using 'tissue' vs 'plot' in the Crop function

#220 Puriney opened 2 months ago
0
Allow feature/varialble name to be next to `)`

#219 maxim-h opened 2 months ago
1
Error when merging objects

#218 asta-a-t opened 2 months ago
0
Add basic CI checks

#217 dcollins15 closed 3 months ago
0
Default branch change affecting `remotes::install_github`

#216 dcollins15 opened 3 months ago
0
Bug (and fix) in LogSeuratCommand when called by Seurat IntegrateData

#215 jernest1 opened 4 months ago
0
Fix/subset stdassay

#214 dcollins15 closed 3 months ago
1
Return variable features directly if you have set them yourself

#213 Gesmira opened 5 months ago
0
fix typos

#212 spaette closed 4 months ago
3
typos

#211 spaette closed 4 months ago
0
Fix md.features and data.features comparison

#210 neanderthalensis opened 5 months ago
0
faster logmap labels

#209 mihem opened 5 months ago
2
`subset(features = ...)` yields `Error in .subscript.2ary(x, i, j, drop = TRUE) : subscript out of bounds` after SCTransform

#208 mschilli87 opened 6 months ago
15
Move on-disk layers path-by-path rather than layer-by-layer

#207 mojaveazure opened 6 months ago
0
Error converting Assay5 to Assay

#206 alexvpickering closed 5 months ago
11
Release/5.0.2

#205 dcollins15 closed 6 months ago
4
Fix/image subset

#204 dcollins15 closed 6 months ago
0
Add `DefaultDimReduc<-`?

#203 samuel-marsh opened 7 months ago
0
Make CellsByIdentities into S3 generic

#202 samuel-marsh opened 7 months ago
0
Unexpected values returned by FetchData() / unsafe programming / change help

#201 vertesy opened 7 months ago
2
Subsetting feature-level metadata fix

#200 Gesmira closed 7 months ago
0
Use `packageVersion("SeuratObject")` in `UpdateSeuratObject()`

#199 mojaveazure closed 6 months ago
0
SaveSeuratRds(): Is there a way to alter directory address of 'on-disk' matrices in Seurat object

#198 Dazcam opened 7 months ago
3
Merge multiple v5 objects into one without splitting layers for counts

#197 aditisk closed 7 months ago
1
Issue with SeuratObject version leads to different numbers of observation from FindAllMarkers

#196 eunksung opened 7 months ago
0
Error when subsetting a joint Seuratobject

#195 moutazhelal opened 7 months ago
0
Bug fix in `PolyVtx()`

#194 mojaveazure closed 7 months ago
0
UpdateSeuratObject() does not create the new Layer-structure of Seurat v5+

#193 vertesy closed 5 months ago
7
Cleanup initialize definition for FOV

#192 dcollins15 closed 8 months ago
1
Inconsistent behavior around single-cell objects

#191 bbimber opened 8 months ago
0
Allow Radius to accept params

#190 dcollins15 closed 8 months ago
0
Add warning if layer is absent from assay

#189 maxim-h closed 6 months ago
0
Change how `pbmc_small` is stored and generated

#188 mojaveazure opened 8 months ago
2
Update seurat.R

#187 mauriziopaul opened 8 months ago
0
Output of CellsByIdentities when an ident level is NA

#186 yerahko opened 8 months ago
0
cannot install package

#185 Flu09 closed 8 months ago
0
RenameCell error when replacing cell-names

#184 swvanderlaan opened 9 months ago
5
Function not found error

#183 Rahul1711arora opened 10 months ago
0
Fixes error in UpdateSeuratObject due to missing global slot.

#182 ddiez closed 9 months ago
1
A warning for counts matrix and metadata with differnet cell names

#181 moi-taiga opened 10 months ago
0
Updates to keys

#180 mojaveazure closed 10 months ago
3
Velocyto- Seurat - invalid class “LogMap” object: Duplicate rownames not allowed

#179 Ruba-Mahmoud opened 10 months ago
2
Fix reexport of `%||%`

#178 mojaveazure closed 10 months ago
0
Warning with `%||% reexport from rlang

#177 lionel- closed 6 months ago
2