Add a wrapper for scanorama integration method (in a Seurat V5 flavor)

satijalab / seurat-wrappers

Community-provided extensions to Seurat

GNU General Public License v3.0

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Add a wrapper for scanorama integration method (in a Seurat V5 flavor) #175

Open fspecque opened 10 months ago

fspecque commented 10 months ago

Hi,

I have created a wrapper for scanorama. It's called ScanoramaIntegration and is intended to be usable as a method by IntegrateLayers.

You'll also find R documentation for the function.

I have not created a vignette however, because scVIIntegration and FastMNNIntegration don't have any either. But please let me know if you think that's necessary.

Best

kobeho24 commented 2 months ago

Is this function working now? I tried it with Seurat 5.1.0 along with SeuratWrappers 0.3.5, and I have Error: object 'ScanoramaIntegration' not found.