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satijalab / seurat-wrappers

Community-provided extensions to Seurat
GNU General Public License v3.0
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Error converting Seurat object to cell_data_set, bug fix no longer exists #189

Open azurocha opened 7 months ago

azurocha commented 7 months ago

When I run this function: merge_all_filtered <- SeuratWrappers::as.cell_data_set(merge_all_filtered) I get: Error in slot(object = *tmp*, name = "preprocess_aux") : no slot of name "preprocess_aux" for this object of class "cell_data_set". I found previous threads (https://github.com/satijalab/seurat-wrappers/pull/120) where remotes::install_github('tfrayner/seurat-wrappers', ref='monocle3-conversion-bugfix') fixed the issue but this commit is no longer there: HTTP error 404. No commit found for the ref monocle3-conversion-bugfix.

Do you have any suggestions as to how to proceed?

corralee commented 6 months ago

I'm using Seurat 4.3 and it worked for me by installing the commit 02754e1 with remotes::install_github('satijalab/seurat-wrappers@02754e1517e51a5ee093e8c2f247b49f85ee2d40')