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satijalab / seurat-wrappers

Community-provided extensions to Seurat
GNU General Public License v3.0
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Warning: Layer counts isn't present in the assay object; returning NULL #194

Open Noralii opened 4 months ago

Noralii commented 4 months ago

data_combined %<>% RunPCA(object = ., features = VariableFeatures(object = .)) %>% #nolint RunFastMNN(object = ., object.list = SplitObject(., split.by = "sampleid")) Computing 2000 integration features Warning: Layer counts isn't present in the assay object; returning NULL Warning: Layer counts isn't present in the assay object; returning NULL Warning: Layer counts isn't present in the assay object; returning NULL Warning: Layer counts isn't present in the assay object; returning NULL Warning: Layer counts isn't present in the assay object; returning NULL Warning: Layer counts isn't present in the assay object; returning NULL Warning: Layer counts isn't present in the assay object; returning NULL Warning: Layer counts isn't present in the assay object; returning NULL