Closed algebio closed 3 years ago
Hi Juan,
Not member of dev team but hopefully can be helpful. If you have the H5 files you can just use the Read10X_h5
function instead of Read10X
.
Best, Sam
Hi Sam
Great answer. Thank you for your help!
Regards Juan
Hi (not sure this is a bug, please correct if mistaken)
I'm running the multimodal_vignette.Rmd but I got stack in one of the last chunks of code to run. (# Loading data from 10X multi-modal experiments). I downloaded two featured filtered files with format h5 and tar.gz from here and I stored them in a folder with same path as the next line requires.
When I run the next line, I get this error:
pbmc10k.data <- Read10X(data.dir = '../data/pbmc10k/filtered_feature_bc_matrix/')
Error in Read10X(data.dir = "C:/Users/njo47/OneDrive - Newcastle University/Documents/Seurat/data/pbmc10k/") : Barcode file missing. Expecting barcodes.tsv.gz 2. stop("Barcode file missing. Expecting ", basename(path = barcode.loc)) 1. Read10X(data.dir = "C:/Users/njo47/OneDrive - Newcastle University/Documents/Seurat/data/pbmc10k/")
How do I get or download tsv.gz files?
Thank you for your help.
Regards Juan