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satijalab / seurat

R toolkit for single cell genomics
http://www.satijalab.org/seurat
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GSEA signature clusters #583

Closed paolo-kunderfranco closed 6 years ago

paolo-kunderfranco commented 6 years ago

Hello, Back to #495 that has been closed,

I still have some concerns,

I have a set of nearly 50 GSEA signatures and I would like to score them in all my cells, similar to what produced by CellCycleScoring function. The main problem is that exploiting this function I can only perform 2 comparison at time, example replacing s.genes with a GSEA set 1 and g2m.genes with a GSEA set 2. Is there a way to import multiple gene set to CellCycleScoring function, or an alternative I may use?

Many Thanks, Paolo

yueqiw commented 6 years ago

AddModuleScore might be what you're looking for.