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satijalab / seurat

R toolkit for single cell genomics
http://www.satijalab.org/seurat
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Spatial RNA-seq: Error in FUN(left, right) : non-numeric argument to binary operator #6426

Closed cplaisier closed 1 year ago

cplaisier commented 2 years ago

There is an issue in the spatial RNA-seq tutorial. If you try and run it on any data that is not your example dataset. That is loading from the output of spaceranger.

When you try and run the first set of plots you get the error:

Error in FUN(left, right) : non-numeric argument to binary operator

Which is caused by a simple issue that the coordinates data is non-numeric. Easy fix. Please implement. Details here:

https://stackoverflow.com/questions/73131436/error-in-funleft-right-non-numeric-argument-to-binary-operator-when-runni

AustinHartman commented 2 years ago

Hi @cplaisier, I am having trouble reproducing on the latest version of Seurat using a human melanoma dataset from 10x. Could you post your session info and possibly a publicly available dataset where you are running into this error?

AustinHartman commented 1 year ago

Closing because of non-response and I'm unable to reproduce.