saketkc
commented
1 year ago Thank you for the suggestion. You can use the assay keys to do this. For example sct_LYZ will plot the data slot of SCT assay for LYZ gene.
Closed rocanja closed 1 year ago
saketkc
commented
1 year ago Thank you for the suggestion. You can use the assay keys to do this. For example sct_LYZ will plot the data slot of SCT assay for LYZ gene.
It would be great if the 'assay' parameter could be added to the FeaturePlot function in a similar way to how it's available for VlnPlot, RidgePlot and DotPlot ... to enable easy plotting of features from custom assays in the seurat object. The current workaround is to reset the default assay with 'DefaultAssay(object = seurat) <- "custom"', but being able to specify the assay in the FeaturePlot call directly would be neater. Thank you for considering and thanks for this great package!