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satijalab / seurat

R toolkit for single cell genomics
http://www.satijalab.org/seurat
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Topn markers for individual cluster #6925

Closed azwainCC closed 1 year ago

azwainCC commented 1 year ago

Hello Is there a way to get dot plot with topn markers for an individual cluster specifically? Thanks in advance, Azwa

mhkowalski commented 1 year ago

Hi- to do this you should run FindMarkers to obtain markers for your cluster of interest. Then you can provide a vector of those genes to the dotplot function, as in DotPlot(object, features = your.markers) Please see the DotPlot documentation for more details.