Closed strawberry098 closed 5 months ago
Hi,
Can you provide your sessionInfo() of your Seurat
and SeuratData
package? Testing from my end, we can see the "NT" column is present in the eccite@meta.data
(see below):
@longmanz
I'm using a dataset from an arrayed CRISPR experiment rather than a pooled screen. After renaming my control sample as "NT", I was able to follow through with the analysis. Thank you!
In the mixscape vignette,
eccite$NT
is not present in the Seurat object metadata table. Is there a typo?Calculate percentage of KO cells for all target gene classes.
df <- prop.table(table(eccite$mixscape_class.global, eccite$NT),2)