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satijalab / seurat

R toolkit for single cell genomics
http://www.satijalab.org/seurat
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Normalization method #858

Closed jial2 closed 6 years ago

jial2 commented 6 years ago

I am using Seurat to do filter and normalization. Currently I am using default method “LogNormalize”, but my colleague suggested using “BISCUIT” or other methods, I don’t know if Seurat can run BISCUIT or other normalization methods. It is not clear in the help document for function NormalizeData. Could you please let me know?

Thanks

satijalab commented 6 years ago

We do not have support for BISCUIT, but you can explore this method on a GitHub repo from the authors: https://github.com/sandhya212/BISCUIT_SingleCell_IMM_ICML_2016