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satijalab / seurat

R toolkit for single cell genomics
http://www.satijalab.org/seurat
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Unable to generate interactive plot using the seurat object as given in the documentation #9039

Closed diyabasu97 closed 1 week ago

diyabasu97 commented 1 week ago

Hi all, I was trying to generate interactive plots using the seurat package as given in the below tutorial https://satijalab.org/seurat/articles/visualization_vignette#interactive-plotting-features

I am able to generate a static PCA plot using DimPlot() function. However, when I ran the HoverLocator function it gave me a white screen instead of an interactive plot.

I have given the code snippet as well as the screenshot of the issue.

issue

Please can you have a look at this and let me know if I am doing something wrong. Any kind of help will be appreciated. Thanks in advance.

Regards, Diya

#Code to generate interactive PCA plot
data<-pbmc_small
plot <- DimPlot(data, reduction = "pca")
HoverLocator(plot = plot)
zskylarli commented 1 week ago

Hi - thank you for your message! I am unable to reproduce this error with pbmc_small or pbmc3k; can you restart your RStudio session, since there may just be an issue with the IDE, or try in another environment such as VSCode? I will close this for now as this behavior is not reproducible, but feel free to reopen the issue if you continue experiencing problems.

diyabasu97 commented 1 week ago

Hi @zskylarli , Thank you for your response. The issue seemed to be with the R version 4.4.0. After I updated it to 4.4.1 it works fine. Thanks again for your help.

Regards, Diya.