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satijalab / seurat

R toolkit for single cell genomics
http://www.satijalab.org/seurat
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SpatialFeaturePlot and SpatialDimplot cannot show the expressed dot #9049

Open gucascau opened 1 week ago

gucascau commented 1 week ago

I lately updated the Seurat and several other R package but realized that the spatial figure no only show the expression details.

Here is an example. any idea? Thanks. Screenshot 2024-06-24 at 5 45 15 PM

dcollins15 commented 1 week ago

Please try setting the pt.size.factor parameter (something large). The way scaling is calculated was updated in v5.1.0 - if you'd like help debugging the issue further, please show us the output of ScaleFactors(object[["slice1"]].