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satijalab / seurat

R toolkit for single cell genomics
http://www.satijalab.org/seurat
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Is it possible to generate multi genes plot using Featurecounts #9058

Closed diyabasu97 closed 3 months ago

diyabasu97 commented 3 months ago

Hi all, I was trying to plot FeaturePlot() for multiple genes using Seurat. So, here for each gene subplot gets generated.

featureplot

However, is it possible to plot the multiple genes in the same plot having different colors using Seurat package? Below is the plot which I would like to generate.

multi-gene_umap

I just want to know if its possible to generate something like this . Apologies for giving the label as bug instead of question , I am unable to edit now.

It would be great if you could help me with this. Thanks in advance.

Regards, Diya

longmanz commented 3 months ago

Hi @diyabasu97, We allow FeaturePlot() to plot two genes in a single plot by using the blend = parameter. However, it does not support bleeding 3 or more genes, since it is impossible to generate a color platte for so many different colors.

There are probably other software/packages that can do this. If you want, please feel free to post it to our Discussions board, where community members and developers can provide more targeted assistance.