Open joshuak94 opened 1 month ago
Thank you for sending this, which is very helpful for us to debug.
Can you check if the rownames of your metadata matches the column names of your object? i.e., all(rownames(object@meta.data)==colnames(object)) if your object is called object?
This relates to https://github.com/satijalab/seurat/issues/9125
Let us know , and we will take a look early next week and get back to you ASAP.
all(rownames(data_seurat_115@meta.data)==colnames(data_seurat_115))
all(rownames(data_seurat_135@meta.data)==colnames(data_seurat_135))
Both yield TRUE.
Hi @rsatija, I was wondering if there was an update regarding this issue?
I was trying to create a reproducible example of another issue I'm having with JoinLayers() taking an indefinite amount of time (killed manually after ~12 hours).
The dataset I used is from here, I used the gene_count_cleaned_sampled_100k.rds file along with the cell_annotation.csv file for metadata.
I split the gene matrix into two groups: E11.5 cells and E13.5 cells. When merging, I get the following warnings, and then eventually an error:
My memory usage also skyrockets to 400+ GB.
Source code:
sessionInfo():