Open Chrisdoan9 opened 5 hours ago
Hi team,
I use a reference data set with around 160,000 cell, so may I know how many cells should I use in this case? Is 40,000 cells good enough? Thank you so much!
allen_reference <- SCTransform(allen_reference, ncells = 40000, verbose = FALSE) %>% RunPCA(verbose = FALSE) %>% RunUMAP(dims = 1:30)
Hi team,
I use a reference data set with around 160,000 cell, so may I know how many cells should I use in this case? Is 40,000 cells good enough? Thank you so much!