satijalab seurat issues

satijalab / seurat

R toolkit for single cell genomics

http://www.satijalab.org/seurat

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anemia fanconi

#9289 bambsan closed 3 weeks ago
0
Error message with FindMarkers in "Introduction to scRNA-seq integration" Vignette

#9288 Rfriedmancolumbia closed 3 weeks ago
1
RNA assay in seurat object for hdWGCNA, should I remove integrated assay?

#9287 yulchen810 closed 3 weeks ago
2
Error in creating an anchor between reference and query data

#9286 howardhkk123 closed 2 weeks ago
0
Error in Read10X_h5(filename = file.path(data.dir, filename), ...) : unused argument (bin.size = c(8, 16))

#9285 ghost closed 3 weeks ago
1
Overlay function can not be implemented after integration

#9284 MengYunWang closed 3 weeks ago
2
FindAllMarkers v4 and v5

#9283 mdidish closed 3 weeks ago
2
Problem Creating a Seurat Object from a .rds file

#9282 inenj closed 3 weeks ago
2
Integrate Data function with anchor method

#9281 martina811 closed 4 weeks ago
1
CosMx Nanostring dataset ImageDimPlot, plot cluster spatial distibution for every FOV seperatly

#9279 Mohamed-Moustafa-tech opened 4 weeks ago
1
pheatmap plot of differential expression expression generated by FindMarkers

#9278 yulchen810 closed 4 weeks ago
2
scTransform Causes Substantial Y Chromosome Gene Abundances in Women Samples

#9277 DarioS opened 4 weeks ago
0
Error: objects ‘winProgressBar’, ‘getWinProgressBar’, ‘setWinProgressBar’ are not exported by 'namespace:utils'

#9276 shijianlvxing-lab opened 4 weeks ago
1
why is RNA assay empty after SCT transform v2 and IntegrateLayers() [SeuratV5]

#9275 klai001 opened 1 month ago
6
Question about GSEA. How to rank?

#9274 Sirin24 closed 3 weeks ago
3
Error in .subscript.2ary(x, , j, drop = drop) : subscript out of bounds

#9273 surinderchd opened 1 month ago
0
Analyze multi-ome object with multiple conditions

#9272 sky5198 closed 3 weeks ago
1
Sparse to dense conversion warning when computing PCA on BPcells backed data

#9271 abs51295 opened 1 month ago
1
ERROR findmarkers latent.vars MAST

#9270 Flu09 opened 1 month ago
0
Load in data from Loupe to Seurat

#9269 drchubos closed 4 weeks ago
3
Feature-level Integration

#9267 DarioS opened 1 month ago
0
as.SingleCellExperiment fails with invalid value

#9266 rbutleriii opened 1 month ago
0
FindAllMarkers returns empty object

#9265 brianFSM opened 1 month ago
0
Different DimPlot between Seurat V4 and V5

#9264 Tongbcc closed 3 weeks ago
6
Cells lost when using ImageDimPlot

#9263 pamelaxu213 opened 1 month ago
0
disdinguish batch effect from real biological difference

#9262 sunshx-bioinfo closed 3 weeks ago
1
Error: package ‘SeuratObject’ 5.0.1 was found, but >= 5.0.2 is required by ‘Seurat’

#9260 imaasif4 closed 2 weeks ago
3
PrepSCTFindMarkers() : Error in `.rowNamesDF<-`(x, value = value) : invalid 'row.names' length

#9259 sarakn97 opened 1 month ago
1
CosMx spatial transcriptomic analysis

#9258 ycui-augusta closed 1 month ago
0
Add lasso tool for cropping xenium datasets

#9257 wykpenguin opened 1 month ago
2
Why Does Reduce + Merge Append ".SeuratProject" to Layer Names?

#9256 Sophia409 opened 1 month ago
0
FindVariableFeatures always finds 2000 Features even when there are more

#9255 yeroslaviz opened 1 month ago
1
Viral load analysis in host organism cells

#9253 tkapello closed 3 weeks ago
1
How canI remove previously identified VariableFeatures after subsetting my SeuratObj?

#9252 yeroslaviz closed 3 weeks ago
1
issue with Seurat object visiumV2 instead of visium V1

#9251 laetitiacollet opened 1 month ago
0
RunUMAP() is not working

#9250 tu-jihao closed 2 weeks ago
2
seruat object interaction vignette link broken

#9248 ChrisSteel-bio closed 2 weeks ago
2
dims in scvi sketch integration

#9247 Flu09 closed 2 weeks ago
3
PercentageFeatureSet fails with uninformative error when user supplies a feature not in features/gene list

#9246 suresh-advaitabio closed 2 weeks ago
1
Long Runtime for FindMarkers Function

#9245 Darya-oveisi opened 1 month ago
1
Segmentation artifact with Xenium samples

#9244 PaulaNietoG opened 1 month ago
5
Use of Seurat in 3D

#9241 MoussaKassim opened 1 month ago
1
Error in .local(obj, ...) : cannot derive coordinates from non-numeric matrix

#9240 jwlsyxff opened 1 month ago
2
Update visualization.R

#9239 mauriziopaul opened 1 month ago
0
SCTransform() Using All Cores

#9238 aa20g217 opened 1 month ago
0
How can integrate 2 multiome samples?

#9237 danli349 opened 1 month ago
0
Question about findmarkers() argument latent.vars

#9236 Flu09 opened 1 month ago
2
Error: object 'integral' not found whilst loading namespace 'spatstat.explore'

#9234 charlenesp opened 1 month ago
1
sketch not working

#9233 Flu09 closed 1 month ago
0
missing values in 'row.names' are not allowed

#9232 zhoududu1001 opened 1 month ago
1

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