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satoken / centroid-rna-package

Centroid RNA package
GNU General Public License v2.0
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configuring centroid-rna package #2

Closed clarajanae closed 8 years ago

clarajanae commented 8 years ago

Hey, I am pretty new at all this and am having a bit of trouble configuring the centroid-rna package and get an error like this

Claras-MacBook-Pro:centroid-rna-package-master clarawilliams$ ./configure --with-vienna-rna= /usr/local/share/ViennaRNA/ configure: WARNING: you should use --build, --host, --target configure: WARNING: invalid host type: /usr/local/share/ViennaRNA/ checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... ./install-sh -c -d checking for gawk... no checking for mawk... no checking for nawk... no checking for awk... awk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking for /usr/local/share/ViennaRNA/-g++... no checking for /usr/local/share/ViennaRNA/-c++... no checking for /usr/local/share/ViennaRNA/-gpp... no checking for /usr/local/share/ViennaRNA/-aCC... no checking for /usr/local/share/ViennaRNA/-CC... no checking for /usr/local/share/ViennaRNA/-cxx... no checking for /usr/local/share/ViennaRNA/-cc++... no checking for /usr/local/share/ViennaRNA/-cl.exe... no checking for /usr/local/share/ViennaRNA/-FCC... no checking for /usr/local/share/ViennaRNA/-KCC... no checking for /usr/local/share/ViennaRNA/-RCC... no checking for /usr/local/share/ViennaRNA/-xlC_r... no checking for /usr/local/share/ViennaRNA/-xlC... no checking for g++... g++ checking whether the C++ compiler works... yes checking for C++ compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking for style of include used by make... GNU checking dependency style of g++... gcc3 checking for /usr/local/share/ViennaRNA/-gcc... no checking for gcc... gcc checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking whether gcc understands -c and -o together... yes checking dependency style of gcc... gcc3 checking whether the compiler implements namespaces... yes checking whether the compiler supports Standard Template Library... yes checking for /usr/local/share/ViennaRNA/-ranlib... no checking for ranlib... ranlib checking whether ln -s works... yes checking for gawk... (cached) awk checking for a sed that does not truncate output... /usr/bin/sed checking for /usr/local/share/ViennaRNA/-ar... no checking for /usr/local/share/ViennaRNA/-lib... no checking for /usr/local/share/ViennaRNA/-link... no checking for ar... ar checking the archiver (ar) interface... ar checking build system type... /usr/local/share/ViennaRNA/ configure: error: invalid value of canonical build

satoken commented 8 years ago

Thank you for using centroid_fold!

I found a typo at running the configure script.

./configure --with-vienna-rna= /usr/local/share/ViennaRNA/

A space between '--with-vienna-rna=' and '/usr/local/share/ViennaRNA/' causes a error. And, could you make sure that the Vienna RNA is installed at /usr/lcoal/share/ViennaRNA instead of /usr/local?

Thanks,