satoken / centroid-rna-package

Centroid RNA package
GNU General Public License v2.0
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Installation problem: line 81: aclocal-1.16: command not found #6

Closed Shunsuke-1994 closed 3 years ago

Shunsuke-1994 commented 4 years ago

Hi. Thank you for providing such a wonderful program.

I tried to install this program on google colab, but i met a installation error as following:

CDPATH="${ZSH_VERSION+.}:" && cd . && /bin/bash /content/boost_1_74_0/centroid-rna-package/missing aclocal-1.16 
/content/boost_1_74_0/centroid-rna-package/missing: line 81: aclocal-1.16: command not found
WARNING: 'aclocal-1.16' is missing on your system.
         You should only need it if you modified 'acinclude.m4' or
         'configure.ac' or m4 files included by 'configure.ac'.
         The 'aclocal' program is part of the GNU Automake package:
         <http://www.gnu.org/software/automake>
         It also requires GNU Autoconf, GNU m4 and Perl in order to run:
         <http://www.gnu.org/software/autoconf>
         <http://www.gnu.org/software/m4/>
         <http://www.perl.org/>
Makefile:358: recipe for target 'aclocal.m4' failed
make: *** [aclocal.m4] Error 127

This is the command I used.

# install viennarna via bioconda
!wget -c https://repo.continuum.io/miniconda/Miniconda3-latest-Linux-x86_64.sh
!chmod +x Miniconda3-latest-Linux-x86_64.sh
!bash ./Miniconda3-latest-Linux-x86_64.sh -b -f -p /usr/local
!conda install  -c bioconda viennarna

# install boost 
!wget https://dl.bintray.com/boostorg/release/1.74.0/source/boost_1_74_0.zip
!unzip boost_1_74_0.zip
%cd boost_1_74_0
!bash bootstrap.sh
!mkdir /content/centroid
!./b2 install -j2 --prefix=/content/centroid

# clone and make
%cd ..
!git clone https://github.com/satoken/centroid-rna-package.git
%cd centroid-rna-package
!./configure  && make && make install

I guess this problem is similar to this issue #4, but I could not find a way... I would appreciate if you would tell me how to solve this error.

Best regards, Shunsuke

satoken commented 3 years ago

Thank you for your interest in our software.

Now, we support the build with cmake in the most recent source. In addition, we provide Dockerfile to ensure a successful installation.

Thanks, Kengo

Shunsuke-1994 commented 3 years ago

Thank you so much for your support!! I will use it.

Best, Shunsuke

MakeitPan commented 9 months ago

nice