Use arbitrary sequence regions for sequence mapping

satta / ltrsift

semi-automatic classification and postprocessing of LTR retrotransposons

GNU General Public License v2.0

5 stars 2 forks source link

Use arbitrary sequence regions for sequence mapping #1

Open satta opened 10 years ago

satta commented 10 years ago

LTRsift still uses the seq0,seq1,... naming scheme from legacy LTRharvest. It needs to be adapted to allow the new style sequence mapping to operate most efficiently with recent LTRharvest/LTRdigest versions as well as annotations generated with third-party tools.