load coding systems data

[cribello]

to upload coding system data the data is hardcoded in the import files as the following: We need to change the code or remember to change our files names to match exactly.

Can't load SNOMED, the file does not exist at codingsystems/data/complete/SNOMEDCT_CORE_SUBSET_200911_utf8.txt
Can't load LOINC, the file does not exist at codingsystems/data/complete/LOINCDB.TXT
Can't load RxTerms, the file does not exist at codingsystems/data/complete/RxTerms201005.txt

[cribello]

Coding Systems data are checked in to https://github.com/mycuratio/indivo_server/tree/mycuratio branch (commit dfec3d46e864711bcf895b1ac3224282ed2e8170)...

We have our own fork https://github.com/mycuratio/indivo_codingsystems forked from https://github.com/chb/indivo_codingsystems ...

I made necessary changes in git config so that it pulls our fork of codingsystem as submodule if you are using mycuratio branch of indivo_server

[cribello]

On postgres from your base install directory python utils/reset.py to get the coding_systems loaded..

[cribello]

files added for coding systems

• new file: HL7_V3_VACCINES.txt
• new file: LOINCDB.TXT
• new file: RxTerms201005.txt
• new file: SNOMEDCT_CORE_SUBSET_200911_utf8.txt

By @dvd481s :

there is nothing in the hl7 file as I cannot find them on the internet.. Well the only org that has it has changed it. The group had a post where someone wrote a script to download behind the scenes just need to try it..