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sbg / sevenbridges-r

Seven Bridges API Client, CWL Schema, Meta Schema, and SDK Helper in R
https://sbg.github.io/sevenbridges-r/
Apache License 2.0
35 stars 14 forks source link

Cannot extend docker image with packages #72

Closed Pantelispanka closed 5 years ago

Pantelispanka commented 5 years ago

FROM sevenbridges/sevenbridges-r

RUN R -e "install.packages(c('BiocManager'), repos='http://cran.cc.uoc.gr/mirrors/CRAN/')"

RUN R -e "BiocManager::install(c('GEOquery'), dependencies=T)" RUN R -e "BiocManager::install(c('limma'), dependencies=T)" RUN R -e "BiocManager::install(c('annotate'), dependencies=T)" RUN R -e "BiocManager::install(c('oligo'), dependencies=T)" RUN R -e "BiocManager::install(c('oligoClasses'), dependencies=T)" RUN R -e "BiocManager::install(c('crossmeta'), dependencies=T)" RUN R -e "BiocManager::install(c('genefilter'), dependencies=T)"

Some packages as oligo can't be installed is there something wrong?

Thanks a lot!

nanxstats commented 5 years ago

-ok, the Docker image was built on rocker/tidyverse, so I don't see a major issue extending it. Other than that, we probably need more information than "can't be installed" to solve the issue.