task run error - Githubissues

sbg / sevenbridges-r

Seven Bridges API Client, CWL Schema, Meta Schema, and SDK Helper in R

https://sbg.github.io/sevenbridges-r/

Apache License 2.0

35 stars 14 forks source link

task run error #77

Closed kgaonkar6 closed 4 years ago

kgaonkar6 commented 4 years ago

Hello,

When I try to run the command from Rstudio using tsk$run() it errors out as

Error: HTTP Status 400: Invalid JSON input
Called from: status_check(req)
Browse[1]> Q

but it successfully runs through clicking "Run" button through GUI.

Please let me know how I can fix this issue (I'm using 1.17.1 sevenbridges version)

Thanks!

nanxstats commented 4 years ago

Hey @kgaonkar6 please try version 1.18.1 from Bioconductor (release branch), or, equivalently, 1.19.1 from the devel branch / GitHub. If the issue persists, we probably need to take a look at the workflow and check if there is an input format problem.

kgaonkar6 commented 4 years ago

I'm closing this issue. 1.19.1 from Github fixed it, thanks!