sbgn / libsbgn

Libraries for the Systems Biology Graphical Notation (SBGN); Java and C++
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Serializations not created in C++ bindings #30

Closed cannin closed 8 years ago

cannin commented 12 years ago

Please add the flag "--generate-serialization" to the XSDFLAGS in the C++ makefile so XSD creates the methods for writing the objects to file as well.

Source: http://www.codesynthesis.com/projects/xsd/documentation/cxx/tree/guide/\#2.5

Reported by: *anonymous

cannin commented 12 years ago

This seems to be important because otherwise "generic namespace prefixes (p1, p2, etc.) will be automatically assigned to XML namespaces". Currently SBGN-ML files saved with the milestone 2 version of LibSBGN(C++) have a namespace prefix: xmlns:p1="http://sbgn.org/libsbgn/0.2".

Original comment by: tobicz

cannin commented 12 years ago

Original comment by: tobicz

cannin commented 12 years ago

Tobias: this is not related to the namespace issue, but another one that I mentioned to Stuart some time ago that got lost then. The SBGN C++ bindings don't provide any XML output routines by default.

Original comment by: *anonymous

cannin commented 11 years ago

Fixed.

Original comment by: stumoodie

cannin commented 11 years ago

Original comment by: stumoodie