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sbgn / ySBGN

Translation between GraphML (yED) and SBGN-ML
https://github.com/sbgn/ySBGN
GNU General Public License v2.0
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A validation step for generated diagrams and/or an automatic correction for editing is needed #9

Open ibalaur opened 5 years ago

ibalaur commented 5 years ago

Currently, the tool checkes the generated SBGN file using the isValid function from libSBGN (SbgnUtil class). The user can check validity of the biological diagram by using other SBGN-support tools, such as the SBGN-ED -> Tools -> Validate within the VANTED software. However, integrating a validation step for the generated SBGN biological diagram wuold help user. Also, a correction step during editing (e.g. adding bend points to represent ports automatically) would be of benefit for user's experience.

ibalaur commented 5 years ago

Validation of the SBGN files can be now checked using libSBGN 3.0: https://github.com/sbgn/libsbgn/releases/tag/milestone3.1

ibalaur commented 5 years ago

The converter validates now the generated SBGN file by using high level validation provided by the libSBGN 3.0 library: https://github.com/sbgn/ySBGN/commit/75cba62f246ed836a55b23df64e4a069dc80eb62. Please see release https://github.com/sbgn/ySBGN/releases/tag/1.2-alpha/.